Title Paper ID Authors Journal Year Link
Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage. 10.1038/ismej.2013.242 Méndez-García C, Mesa V, Sprenger RR, Richter M, Diez MS, Solano J, Bargiela R, Golyshina OV, et al. ISME J 2014 DOI
The logic of metabolism and its fuzzy consequences. 10.1111/1462-2920.12270 Danchin A, Sekowska A Environ. Microbiol. 2014 DOI
Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious. 10.1073/pnas.1312361110 Wagner A, Zarecki R, Reshef L, Gochev C, Sorek R, Gophna U, Ruppin E Proc. Natl. Acad. Sci. U.S.A. 2013 DOI
Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395. 10.1099/ijs.0.053900-0 Buddruhs N, Pradella S, Göker M, Päuker O, Pukall R, Spröer C, Schumann P, Petersen J, Brinkhoff T Int. J. Syst. Evol. Microbiol. 2013 DOI
Metabolically re-modeling the drug pipeline. 10.1016/j.coph.2013.05.006 Oberhardt MA, Yizhak K, Ruppin E Curr Opin Pharmacol 2013 DOI
From genome mining to phenotypic microarrays: Planctomycetes as source for novel bioactive molecules. 10.1007/s10482-013-0007-1 Jeske O, Jogler M, Petersen J, Sikorski J, Jogler C Antonie Van Leeuwenhoek 2013 DOI
Taming the complexity of large models. 10.1038/embor.2013.145 Oberhardt M, Ruppin E EMBO Rep. 2013 DOI
Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43(T)). 10.4056/sigs.3486982 Fiebig A, Pradella S, Petersen J, Michael V, Päuker O, Rohde M, Göker M, Klenk HP, Wagner-Döbler I Stand Genomic Sci 2013 DOI
Genome of the R-body producing marine alphaproteobacterium Labrenzia alexandrii type strain (DFL-11(T)). 10.4056/sigs.3456959 Fiebig A, Pradella S, Petersen J, Päuker O, Michael V, Lünsdorf H, Göker M, Klenk HP, Wagner-Döbler I Stand Genomic Sci 2013 DOI
Paralogous metabolism: S-alkyl-cysteine degradation in Bacillus subtilis. 10.1111/1462-2920.12210 Chan CM, Danchin A, Marlière P, Sekowska A Environ. Microbiol. 2013 DOI
Expanding the Boolean Logic of the Prokaryotic Transcription Factor XylR by Functionalization of Permissive Sites with a Protease-Target Sequence. 10.1021/sb400050k Calles B, Lorenzo VD ACS Synth Biol 2013 DOI
Engineering Multicellular Logic in Bacteria with Metabolic Wires. 10.1021/sb400064y Silva-Rocha R, de Lorenzo V ACS Synth Biol 2013 DOI
opm: an R package for analysing OmniLog(R) phenotype microarray data. 10.1093/bioinformatics/btt291 Vaas LA, Sikorski J, Hofner B, Fiebig A, Buddruhs N, Klenk HP, Göker M Bioinformatics 2013 DOI
Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour in Pseudomonas putida KT2440. 23687963 Nikel PI, Chavarría M, Martínez-García E, Taylor AC, de Lorenzo V Microb. Cell Fact. 2013 PubMed
NanoPad: an integrated platform for bacterial production of camel nanobodies aimed at detecting environmental biomarkers. 10.1002/pmic.201300009 Fraile S, Jiménez JI, Gutiérrez C, de Lorenzo V Proteomics 2013 DOI
An updated metabolic view of the Bacillus subtilis 168 genome. 10.1099/mic.0.064691-0 Belda E, Sekowska A, Le Fèvre F, Morgat A, Mornico D, Ouzounis C, Vallenet D, Médigue C, Danchin A Microbiology (Reading, Engl.) 2013 DOI
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloprop-1-ene metabolism by Pseudomonas pavonaceae. 10.1098/rstb.2012.0377 Nikel PI, Pérez-Pantoja D, de Lorenzo V Philos. Trans. R. Soc. Lond., B, Biol. Sci. 2013 DOI
Detection of genomic idiosyncrasies using fuzzy phylogenetic profiles. 23341912 Psomopoulos FE, Mitkas PA, Ouzounis CA PLoS ONE 2013 PubMed
Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2. 10.1038/ismej.2012.98 Silva-Rocha R, Pérez-Pantoja D, de Lorenzo V ISME J 2013 DOI
Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene. 10.1016/j.ymben.2012.09.006 Nikel PI, de Lorenzo V Metab. Eng. 2013 DOI
Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors. 10.1016/j.jbiotec.2012.05.002 Nikel PI, de Lorenzo V J. Biotechnol. 2013 DOI
Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida. 10.1111/j.1462-2920.2012.02808.x Chavarría M, Fuhrer T, Sauer U, Pflüger-Grau K, de Lorenzo V Environ. Microbiol. 2013 DOI
Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida. 10.1111/j.1462-2920.2012.02808.x Chavarría M, Fuhrer T, Sauer U, Pflüger-Grau K, de Lorenzo V Environ. Microbiol. 2013 DOI
The IHF regulon of exponentially growing Pseudomonas putida cells. 10.1111/j.1462-2920.2012.02750.x Silva-Rocha R, Chavarría M, Kleijn RJ, Sauer U, de Lorenzo V Environ. Microbiol. 2013 DOI
The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space. 10.1111/1462-2920.12014 Silva-Rocha R, de Lorenzo V Environ. Microbiol. 2013 DOI
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. 10.1093/nar/gks1119 Silva-Rocha R, Martínez-García E, Calles B, Chavarría M, Arce-Rodríguez A, de Las Heras A, Páez-Espino AD, Durante-Rodríguez G, Nucleic Acids Res. 2013 DOI
Constraints in the design of the synthetic bacterial chassis 10.1016/B978-0-12-417029-2.00002-9 A Danchin, A Sekowska Methods in Microbiology 2013 DOI
MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data 10.1093/nar/gks1194 David Vallenet, Eugeni Belda, Alexandra Calteau, Stéphane Cruveiller, Stefan Engelen, Aurélie Lajus, François Le Fèvre, et al. Nucl. Acids Res. 2012 DOI
COVER: a priori estimation of coverage for metagenomic sequencing. 10.1111/j.1758-2229.2012.00338.x Tamames J, de la Peña S, de Lorenzo V Environ Microbiol Rep 2012 DOI
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress. 10.1111/1462-2920.12069 Chavarría M, Nikel PI, Pérez-Pantoja D, de Lorenzo V Environ. Microbiol. 2012 DOI
From essential to persistent genes: a functional approach to constructing synthetic life. 23219343 Acevedo-Rocha CG, Fang G, Schmidt M, Ussery DW, Danchin A Trends Genet. 2012 PubMed
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. 10.1093/bib/bbs072 Promponas VJ, Ouzounis CA, Iliopoulos I Brief. Bioinformatics 2012 DOI
Towards a global biotechnology scenario. 10.1016/j.copbio.2012.10.007 de Lorenzo V Curr. Opin. Biotechnol. 2012 DOI
Reconciliation of metabolites and biochemical reactions for metabolic networks. 23172809 Bernard T, Bridge A, Morgat A, Moretti S, Xenarios I, Pagni M Brief. Bioinformatics 2012 PubMed
Increasing signal specificity of the TOL network of Pseudomonas putida mt-2 by rewiring the connectivity of the master regulator XylR. 10.1371/journal.pgen.1002963 de Las Heras A, Fraile S, de Lorenzo V PLoS Genet. 2012 DOI
Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene. 10.1111/j.1365-2958.2012.08184.x Silva-Rocha R, de Lorenzo V Mol. Microbiol. 2012 DOI
Integrative genomic analysis identifies isoleucine and CodY as regulators of Listeria monocytogenes virulence. 10.1371/journal.pgen.1002887 Lobel L, Sigal N, Borovok I, Ruppin E, Herskovits AA PLoS Genet. 2012 DOI
A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. 10.1038/nprot.2012.088 Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J Nat Protoc 2012 DOI
Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds. 22710181 Lam CM, Suárez Diez M, Godinho M, Martins dos Santos VA FEBS Lett. 2012 PubMed
Scaling up synthetic biology: Do not forget the chassis. 10.1016/j.febslet.2011.12.024 Danchin A FEBS Lett. 2012 DOI
Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology. 10.1016/j.febslet.2012.02.022 Schmidt M, de Lorenzo V FEBS Lett. 2012 DOI
Linking selenium biogeochemistry to the sulfur-dependent biological detoxification of arsenic. 10.1111/j.1462-2920.2012.02758.x Couture RM, Sekowska A, Fang G, Danchin A Environ. Microbiol. 2012 DOI
The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes. 22693442 Smith AA, Belda E, Viari A, Medigue C, Vallenet D PLoS Comput. Biol. 2012 PubMed
Production and characterization of a recombinant single-chain antibody (scFv) for tracing the σ54 factor of Pseudomonas putida. 10.1016/j.jbiotec.2011.12.011 Jurado P, Fernández LA, de Lorenzo V J. Biotechnol. 2012 DOI
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. 10.1039/c2mb25030f Silva-Rocha R, de Lorenzo V Mol Biosyst 2012 DOI
Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor. 10.1039/c2mb25030f Silva-Rocha R, de Lorenzo V Mol Biosyst 2012 DOI
Protoanemonin: a natural quorum sensing inhibitor that selectively activates iron starvation response. 22672701 Bobadilla Fazzini RA, Skindersoe ME, Bielecki P, Puchałka J, Givskov M, Martins Dos Santos VA Environ. Microbiol. 2012 PubMed
Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida. 22429517 Leprince A, de Lorenzo V, Völler P, van Passel MW, Martins dos Santos VA Environ. Microbiol. 2012 PubMed
Streamlining genomes: toward the generation of simplified and stabilized microbial systems. 22651991 Leprince A, van Passel MW, Dos Santos VA Curr. Opin. Biotechnol. 2012 PubMed
Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC. 10.1186/1471-2164-13-69 Engelen S, Vallenet D, Médigue C, Danchin A BMC Genomics 2012 DOI
Rise and demise of bioinformatics? Promise and progress. 10.1371/journal.pcbi.1002487 Ouzounis CA PLoS Comput. Biol. 2012 DOI
Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics. 10.1371/journal.pone.0034846 Vaas LA, Sikorski J, Michael V, Göker M, Klenk HP PLoS ONE 2012 DOI
A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria. 10.1371/journal.pone.0034675 Silva-Rocha R, de Lorenzo V PLoS ONE 2012 DOI
Regulatory tasks of the phosphoenolpyruvate-phosphotransferase system of Pseudomonas putida in central carbon metabolism. 10.1128/mBio.00028-12 Chavarría M, Kleijn RJ, Sauer U, Pflüger-Grau K, de Lorenzo V MBio 2012 DOI
Industrial biotechnology of Pseudomonas putida and related species. 22350258 Poblete-Castro I, Becker J, Dohnt K, dos Santos VM, Wittmann C Appl. Microbiol. Biotechnol. 2012 PubMed
The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP. 10.1111/j.1462-2920.2011.02622.x Arce-Rodríguez A, Durante-Rodríguez G, Platero R, Krell T, Calles B, de Lorenzo V Environ. Microbiol. 2012 DOI
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J Nucleic Acids Res. 2012 DOI
Synthetic biology's flywheel. 10.1038/embor.2011.253 Danchin A EMBO Rep. 2012 DOI
Rhea--a manually curated resource of biochemical reactions. 10.1093/nar/gkr1126 Nucleic Acids Res. 2012 DOI
UniPathway: a resource for the exploration and annotation of metabolic pathways. 10.1093/nar/gkr1023 Morgat A, Coissac E, Coudert E, Axelsen KB, Keller G, Bairoch A, Bridge A, Bougueleret L, Xenarios I, Viari A Nucleic Acids Res. 2012 DOI
Characterization of NrnA homologs from Mycobacterium tuberculosis and Mycoplasma pneumoniae. 10.1261/rna.029132.111 Postic G, Danchin A, Mechold U RNA 2012 DOI
Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling. 10.1007/978-1-61779-361-5_1 van Helden J, Toussaint A, Thieffry D Methods Mol. Biol. 2012 DOI
Engineering whole-cell biosensors with no antibiotic markers for monitoring aromatic compounds in the environment. 10.1007/978-1-61779-483-4_17 de Las Heras A, de Lorenzo V Methods Mol. Biol. 2012 DOI
Predicting metabolic pathways by sub-network extraction. 10.1007/978-1-61779-361-5_7 Faust K, van Helden J Methods Mol. Biol. 2012 DOI
Transposon-based and plasmid-based genetic tools for editing genomes of gram-negative bacteria. 10.1007/978-1-61779-412-4_16 Martínez-García E, de Lorenzo V Methods Mol. Biol. 2012 DOI
From essential to persistent genes: a functional approach to constructing synthetic life 10 Acevedo-Rocha CG, Fang G, Schmidt M, Ussery DW, Danchin A. Trends Genet. 2012 PubMed
The Chlamydiales Pangenome Revisited: Structural Stability and Functional Coherence 10.3390/genes3020291 Psomopoulos FE, Siarkou VI, Papanikolaou N, Iliopoulos I, Tsaftaris AS, Promponas VJ, Ouzounis CA Genes 2012 DOI
The logic of decision-making in environmental bacteria 978-3-527-33228 Silva-Rocha R., Tamames J., and de Lorenzo V. 2012 ISBN
The quest for an upper limit in systems biology 6 Ouzounis CA, Promponas VJ, Iliopoulos I J. Biol. Res. 2012 DOI
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. 10.1186/1752-0509-5-191 Silva-Rocha R, de Jong H, Tamames J, de Lorenzo V BMC Syst Biol 2011 DOI
Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1. 22180818 Stand Genomic Sci 2011 DOI
BioTextQuest: a web-based biomedical text mining suite for concept discovery. 10.1093/bioinformatics/btr564 Papanikolaou N, Pafilis E, Nikolaou S, Ouzounis CA, Iliopoulos I, Promponas VJ Bioinformatics 2011 DOI
Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting. 10.1111/j.1365-2958.2011.07835.x Valls M, Silva-Rocha R, Cases I, Muñoz A, de Lorenzo V Mol. Microbiol. 2011 DOI
A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations. 10.1039/C1MB05264K Silva-Rocha R, de Lorenzo V Mol Biosyst 2011 DOI
Association of dnt genes of Burkholderia sp. DNT with the substrate-blind regulator DntR draws the evolutionary itinerary of 2,4-dinitrotoluene biodegradation. 10.1111/j.1365-2958.2011.07825.x de Las Heras A, Chavarría M, de Lorenzo V Mol. Microbiol. 2011 DOI
Engineering multiple genomic deletions in Gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440. 10.1111/j.1462-2920.2011.02538.x Martínez-García E, de Lorenzo V Environ. Microbiol. 2011 DOI
Selection of organisms for the co-evolution-based study of protein interactions. 10.1186/1471-2105-12-363 Herman D, Ochoa D, Juan D, Lopez D, Valencia A, Pazos F BMC Bioinformatics 2011 DOI
The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms. 10.1111/j.1462-2920.2011.02455.x Silva-Rocha R, Tamames J, dos Santos VM, de Lorenzo V Environ. Microbiol. 2011 DOI
Salmonella bongori provides insights into the evolution of the Salmonellae. 10.1371/journal.ppat.1002191 PLoS Pathog. 2011 DOI
The interplay of the EIIA(Ntr) component of the nitrogen-related phosphotransferase system (PTS(Ntr)) of Pseudomonas putida with pyruvate dehydrogenase. 10.1016/j.bbagen.2011.01.002 Pflüger-Grau K, Chavarría M, de Lorenzo V Biochim. Biophys. Acta 2011 DOI
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. 21793736 N. Engl. J. Med. 2011 PubMed
Unraveling networks of co-regulated genes on the sole basis of genome sequences. 10.1093/nar/gkr264 Brohée S, Janky R, Abdel-Sater F, Vanderstocken G, André B, van Helden J Nucleic Acids Res. 2011 DOI
Prediction of metabolic pathways from genome-scale metabolic networks. 10.1016/j.biosystems.2011.05.004 Faust K, Croes D, van Helden J BioSystems 2011 DOI
Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli. 10.1039/C1MB05094J Silva-Rocha R, de Lorenzo V Mol Biosyst 2011 DOI
RSAT 2011: regulatory sequence analysis tools. 10.1093/nar/gkr377 Thomas-Chollier M, Defrance M, Medina-Rivera A, Sand O, Herrmann C, Thieffry D, van Helden J Nucleic Acids Res. 2011 DOI
Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction. 10.1186/1752-0509-5-83 Fang K, Zhao H, Sun C, Lam CM, Chang S, Zhang K, Panda G, Godinho M, Martins dos Santos VA, Wang J BMC Syst Biol 2011 DOI
Beware of metaphors: chasses and orthogonality in synthetic biology. 21636982 de Lorenzo V Bioeng Bugs 2011 PubMed
Life's demons: information and order in biology. What subcellular machines gather and process the information necessary to sustain life? 10.1038/embor.2011.83 Binder PM, Danchin A EMBO Rep. 2011 DOI
Lack of the delta subunit of RNA polymerase increases virulence related traits of Streptococcus mutans. 10.1371/journal.pone.0020075 Xue X, Sztajer H, Buddruhs N, Petersen J, Rohde M, Talay SR, Wagner-Döbler I PLoS ONE 2011 DOI
In situ detection of aromatic compounds with biosensor Pseudomonas putida cells preserved and delivered to soil in water-soluble gelatin capsules. 10.1007/s00216-010-4558-y de las Heras A, de Lorenzo V Anal Bioanal Chem 2011 DOI
Monitoring biodegradative enzymes with nanobodies raised in Camelus dromedarius with mixtures of catabolic proteins. 10.1111/j.1462-2920.2010.02401 Zafra O, Fraile S, Gutiérrez C, Haro A, Páez-Espino AD, Jiménez JI, de Lorenzo V Environ. Microbiol. 2011 DOI
Metabolic modeling of endosymbiont genome reduction on a temporal scale. 10.1038/msb.2011.11 Yizhak K, Tuller T, Papp B, Ruppin E Mol. Syst. Biol. 2011 DOI
Fructose 1-phosphate is the preferred effector of the metabolic regulator Cra of Pseudomonas putida. 10.1074/jbc.M110.187583 Chavarría M, Santiago C, Platero R, Krell T, Casasnovas JM, de Lorenzo V J. Biol. Chem. 2011 DOI
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect. 10.1371/journal.pcbi.1002018 Shlomi T, Benyamini T, Gottlieb E, Sharan R, Ruppin E PLoS Comput. Biol. 2011 DOI
pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes. 10.1186/1471-2180-11-38 Martínez-García E, Calles B, Arévalo-Rodríguez M, de Lorenzo V BMC Microbiol. 2011 DOI
Core and panmetabolism in Escherichia coli. 21239590 Vieira G, Sabarly V, Bourguignon PY, Durot M, Le Fèvre F, Mornico D, Vallenet D, Bouvet O, Denamur E, Schachter V, Médigue C J. Bacteriol. 2011 PubMed
Cooperative amino acid changes shift the response of the σ⁵⁴-dependent regulator XylR from natural m-xylene towards xenobiotic 2,4-dinitrotoluene. 10.1111/j.1365-2958.2010.07518.x de Las Heras A, de Lorenzo V Mol. Microbiol. 2011 DOI
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida. 10.1111/j.1462-2920.2010.02331.x Milanesio P, Arce-Rodríguez A, Muñoz A, Calles B, de Lorenzo V Environ. Microbiol. 2011 DOI
Genes that move the window of viability of life: lessons from bacteria thriving at the cold extreme: mesophiles can be turned into extremophiles by substituting essential genes. 10.1002/bies.201000101 de Lorenzo V Bioessays 2011 DOI
Antifragility and Tinkering in Biology (and in Business) Flexibility Provides an Efficient Epigenetic Way to Manage Risk 10.3390/genes2040998 Antoine Danchin, Philippe M. Binder, Stanislas Noria Genes 2011 DOI
Competitive and cooperative metabolic interactions in bacterial communities 10.1038/ncomms1597 S. Freilich, R. Zarecki, O. Eilam, E. Shiftman Segal, C.S. Henry, M. Kupiec, U. Gophna, R. Sharan, E. Ruppin Nat Commun. 2011 DOI
Maxwell's demon's genes: Can we build a cell factory? 5 A Danchin Comptes Rendus de l'Académie des Sciences, Chimie 2011 DOI
A path from predation to mutualism. 10.1111/j.1365-2958.2010.07341.x Danchin A Mol. Microbiol. 2010 DOI
Noise and robustness in prokaryotic regulatory networks. 20825349 Silva-Rocha R, de Lorenzo V Annu. Rev. Microbiol. 2010 PubMed
The large-scale organization of the bacterial network of ecological co-occurrence interactions. 10.1093/nar/gkq118 Freilich S, Kreimer A, Meilijson I, Gophna U, Sharan R, Ruppin E Nucleic Acids Res. 2010 DOI
A sequel to "Cells need safety valves" 1 Fourmentin, Eric; Danchin, Antoine Symplectic Biology 2010 DOI
Characterization of NrnA homologs from Mycobacterium tuberculosis and Mycoplasma pneumoniae 3 Postic, Guillaume; Danchin, Antoine; Mechold, Undine Symplectic Biology. 2010 DOI
Life under the Microscope 2 Kersey P., Medigue C., Ouzounis C., De Lorenzo V. Research Media Ldt. 2010 DOI
Science and Arsenic Fool's Gold: A Toxic Broth 4 Antoine Danchin Journal of Cosmology 2010 DOI
Genome sequence of Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements 10.4056/sigs.3858183 Riedel T, Teshima H, Petersen J, Fiebig A, Davenport K, Daligault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pata A, Ivanova N, G Stand Genomic Sci DOI